Bioinformatics Advance Access for 15 Feb 2013
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Original Papers
Protein signature-based estimation of metagenomic abundances including all domains of life and viruses
Bioinformatics published 15 February 2013, 10.1093/bioinformatics/btt077
Chemical rule-based filtering of MS/MS spectra
Bioinformatics published 15 February 2013, 10.1093/bioinformatics/btt061
Classification of Mislabelled Microarrays using Robust Sparse Logistic Regression
Bioinformatics published 15 February 2013, 10.1093/bioinformatics/btt078
A powerful Bayesian meta-analysis method to integrate multiple gene set enrichment studies
Bioinformatics published 15 February 2013, 10.1093/bioinformatics/btt068
Prediction of contact matrix for protein-protein interaction
Bioinformatics published 15 February 2013, 10.1093/bioinformatics/btt076
Bayesian parentage analysis with systematic accountability of genotyping error, missing data and false matching
Bioinformatics published 30 January 2013, 10.1093/bioinformatics/btt039
Drug-SNPing: an integrated drug-based, protein interaction-based tagSNP-based pharmacogenomics platform for SNP genotyping
Bioinformatics published 15 February 2013, 10.1093/bioinformatics/btt037
Composition and abstraction of logical regulatory modules: application to multicellular systems
Bioinformatics published 22 January 2013, 10.1093/bioinformatics/btt033
A new way to protect privacy in large-scale genome-wide association studies
Bioinformatics published 14 February 2013, 10.1093/bioinformatics/btt066
SPINAL: Scalable Protein Interaction Network Alignment
Bioinformatics published 14 February 2013, 10.1093/bioinformatics/btt071
Efficient comparison of sets of intervals with NC-lists
Bioinformatics published 14 February 2013, 10.1093/bioinformatics/btt070
An Approximate Bayesian Approach to Mapping Paired-End DNA Reads to a Reference Genome
Bioinformatics published 14 February 2013, 10.1093/bioinformatics/btt073
GROMACS 4.5: A high-throughput and highly parallel open source molecular simulation toolkit
Bioinformatics published 13 February 2013, 10.1093/bioinformatics/btt055
A Dynamic Bayesian Markov Model for Phasing and Characterizing Haplotypes in Next Generation Sequencing
Bioinformatics published 13 February 2013, 10.1093/bioinformatics/btt065
Hybrid regulatory models: a statistically tractable approach to model regulatory network dynamics
Bioinformatics published 13 February 2013, 10.1093/bioinformatics/btt069
Extracting 3D cell parameters from dense tissue environments: application to the development of the mouse heart
Bioinformatics published 21 January 2013, 10.1093/bioinformatics/btt027
A new algorithm for context-based biomedical diagram similarity estimation
Bioinformatics published 7 February 2013, 10.1093/bioinformatics/btt030
Computational phosphorylation site prediction in plants using random forests and organism-specific instance weights
Bioinformatics published 22 January 2013, 10.1093/bioinformatics/btt031
PreDNA: accurate prediction of DNA-binding sites in proteins by integrating sequence and geometric structure information
Bioinformatics published 17 January 2013, 10.1093/bioinformatics/btt029
Genome Fusion Detection: a novel method to detect fusion genes from SNP-array data
Bioinformatics published 22 January 2013, 10.1093/bioinformatics/btt028
Application Note
BION web server: predicting non-specifically bound surface ions
Bioinformatics published 3 February 2013, 10.1093/bioinformatics/btt032
Applications Note
eMZed: an open source framework in Python for rapid and interactive development of LC/MS data analysis workflows
Bioinformatics published 15 February 2013, 10.1093/bioinformatics/btt080
mRNAStab—a web application for mRNA stability analysis
Bioinformatics published 25 January 2013, 10.1093/bioinformatics/btt040
AbCD: arbitrary coverage design for sequencing-based genetic studies
Bioinformatics published 28 January 2013, 10.1093/bioinformatics/btt041
metaNetX.org: a website and repository for accessing, analysing and manipulating metabolic networks
Bioinformatics published 28 January 2013, 10.1093/bioinformatics/btt036
Fragment recruitment on metabolic pathways: comparative metabolic profiling of metagenomes and metatranscriptomes
Bioinformatics published 9 January 2013, 10.1093/bioinformatics/bts721
essaMEM: finding maximal exact matches using enhanced sparse suffix arrays
Bioinformatics published 24 January 2013, 10.1093/bioinformatics/btt042
GalaxyGemini: a web server for protein homo-oligomer structure prediction based on similarity
Bioinformatics published 14 February 2013, 10.1093/bioinformatics/btt079
Wessim: A whole exome sequencing simulator based on in silico exome capture
Bioinformatics published 14 February 2013, 10.1093/bioinformatics/btt074
SwarmDock: a server for flexible protein–protein docking
Bioinformatics published 23 January 2013, 10.1093/bioinformatics/btt038
TACTICS, an interactive platform for customized high-content bioimaging analysis
Bioinformatics published 22 January 2013, 10.1093/bioinformatics/btt035
ScalaBLAST 2.0: rapid and robust BLAST calculations on multiprocessor systems
Bioinformatics published 29 January 2013, 10.1093/bioinformatics/btt013
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