UCSC中基因组版本与其它数据库版本对应关系
因为各数据库对基因组有一套自己的命名法则，往往说的名称不一样，但基因组序列相同，如UCSC的hg19和NCBI的GRCh37就是同一基因组，现将UCSC中基因组版本与其它数据库版本的对应关系列出，方便大家查找。
| SPECIES | UCSC VERSION | RELEASE DATE | RELEASE NAME | STATUS |
| MAMMALS | ||||
| Human | hg19 | Feb. 2009 | Genome Reference Consortium GRCh37 | Available |
| hg18 | Mar. 2006 | NCBI Build 36.1 | Available | |
| hg17 | May 2004 | NCBI Build 35 | Available | |
| hg16 | Jul. 2003 | NCBI Build 34 | Available | |
| hg15 | Apr. 2003 | NCBI Build 33 | Archived | |
| hg13 | Nov. 2002 | NCBI Build 31 | Archived | |
| hg12 | Jun. 2002 | NCBI Build 30 | Archived | |
| hg11 | Apr. 2002 | NCBI Build 29 | Archived (data only) | |
| hg10 | Dec. 2001 | NCBI Build 28 | Archived (data only) | |
| hg8 | Aug. 2001 | UCSC-assembled | Archived (data only) | |
| hg7 | Apr. 2001 | UCSC-assembled | Archived (data only) | |
| hg6 | Dec. 2000 | UCSC-assembled | Archived (data only) | |
| hg5 | Oct. 2000 | UCSC-assembled | Archived (data only) | |
| hg4 | Sep. 2000 | UCSC-assembled | Archived (data only) | |
| hg3 | Jul. 2000 | UCSC-assembled | Archived (data only) | |
| hg2 | Jun. 2000 | UCSC-assembled | Archived (data only) | |
| hg1 | May 2000 | UCSC-assembled | Archived (data only) | |
| Alpaca | vicPac1 | Jul. 2008 | Broad Institute VicPac1.0 | Available |
| Armadillo | dasNov3 | Dec. 2011 | Broad Institute DasNov3 | Available |
| Bushbaby | otoGar3 | Mar. 2011 | Broad Institute OtoGar3 | Available |
| Baboon | papHam1 | Nov. 2008 | Baylor College of Medicine HGSC Pham_1.0 | Available |
| papAnu2 | Mar. 2012 | Baylor College of Medicine Panu_2.0 | Available | |
| Cat | felCat5 | Sep. 2011 | ICGSC Felis_catus-6.2 | Available |
| felCat4 | Dec. 2008 | NHGRI catChrV17e | Available | |
| felCat3 | Mar. 2006 | Broad Institute Release 3 | Available | |
| Chimp | panTro4 | Feb. 2011 | CGSC Build 2.1.4 | Available |
| panTro3 | Oct. 2010 | CGSC Build 2.1.3 | Available | |
| panTro2 | Mar. 2006 | CGSC Build 2.1 | Available | |
| panTro1 | Nov. 2003 | CGSC Build 1.1 | Available | |
| Cow | bosTau7 | Oct. 2011 | Baylor College of Medicine HGSC Btau_4.6.1 | Available |
| bosTau6 | Nov. 2009 |
University of Maryland v3.1 | Available | |
| bosTau4 | Oct. 2007 | Baylor College of Medicine HGSC Btau_4.0 | Available | |
| bosTau3 | Aug. 2006 | Baylor College of Medicine HGSC Btau_3.1 | Available | |
| bosTau2 | Mar. 2005 | Baylor College of Medicine HGSC Btau_2.0 | Available | |
| bosTau1 | Sep. 2004 | Baylor College of Medicine HGSC Btau_1.0 | Archived | |
| Dog | canFam3 | Sep. 2011 | Broad Institute v3.1 | Available |
| canFam2 | May 2005 | Broad Institute v2.0 | Available | |
| canFam1 | Jul. 2004 | Broad Institute v1.0 | Available | |
| Dolphin | turTru2 | Oct. 2011 | Baylor College of Medicine Ttru_1.4 | Available |
| Elephant | loxAfr3 | Jul. 2009 | Broad Institute LoxAfr3 | Available |
| Gibbon | nomLeu2 | Jun. 2011 | Gibbon Genome Sequencing Consortium Nleu1.1 | Available |
| nomLeu1 | Jan. 2010 | Gibbon Genome Sequencing Consortium Nleu1.0 | Available | |
| Gorilla | gorGor3 | May 2011 | Wellcome Trust Sanger Institute gorGor3.1 | Available |
| Guinea pig | cavPor3 | Feb. 2008 | Broad Institute cavPor3 | Available |
| Hedgehog | eriEur1 | Jun. 2006 | Broad Institute Draft_v1 | Available |
| Horse | equCab2 | Sep. 2007 | Broad Institute EquCab2 | Available |
| equCab1 | Jan. 2007 | Broad Institute EquCab1 | Available | |
| Kangaroo rat | dipOrd1 | Jul. 2008 | Baylor/Broad Institute DipOrd1.0 | Available |
| Manatee | triMan1 | Oct. 2011 | Broad Institute TriManLat1.0 | Available |
| Marmoset | calJac3 | Mar. 2009 | WUSTL Callithrix_jacchus-v3.2 | Available |
| calJac1 | Jun. 2007 | WUSTL Callithrix_jacchus-v2.0.2 | Available | |
| Megabat | pteVam1 | Jul. 2008 | Broad Institute Ptevap1.0 | Available |
| Microbat | myoLuc2 | Jul. 2010 | Broad Institute MyoLuc2.0 | Available |
| Mouse | mm10 | Dec. 2011 | Genome Reference Consortium GRCm38 | Available |
| mm9 | Jul. 2007 | NCBI Build 37 | Available | |
| mm8 | Feb. 2006 | NCBI Build 36 | Available | |
| mm7 | Aug. 2005 | NCBI Build 35 | Available | |
| mm6 | Mar. 2005 | NCBI Build 34 | Archived | |
| mm5 | May 2004 | NCBI Build 33 | Archived | |
| mm4 | Oct. 2003 | NCBI Build 32 | Archived | |
| mm3 | Feb. 2003 | NCBI Build 30 | Archived | |
| mm2 | Feb. 2002 | MGSCv3 | Archived | |
| mm1 | Nov. 2001 | MGSCv2 | Archived (data only) | |
| Mouse lemur | micMur1 | Jul. 2007 | Broad Institute MicMur1.0 | Available |
| Naked mole-rat | hetGla2 | Jan. 2012 | Broad Institute HetGla_female_1.0 | Available |
| hetGla1 | Jul. 2011 | Beijing Genomics Institute HetGla_1.0 | Available | |
| Opossum | monDom5 | Oct. 2006 | Broad Institute release MonDom5 | Available |
| monDom4 | Jan. 2006 | Broad Institute release MonDom4 | Available | |
| monDom1 | Oct. 2004 | Broad Institute release MonDom1 | Available | |
| Orangutan | ponAbe2 | Jul. 2007 | WUSTL Pongo_albelii-2.0.2 | Available |
| Panda | ailMel1 | Dec. 2009 | BGI-Shenzhen AilMel 1.0 | Available |
| Pig | susScr3 | Aug. 2011 | Swine Genome Sequencing Consortium Sscrofa10.2 | Available |
| susScr2 | Nov. 2009 | Swine Genome Sequencing Consortium Sscrofa9.2 | Available | |
| Pika | ochPri2 | Jul. 2008 | Broad Institute release OchPri2 | Available |
| Platypus | ornAna1 | Mar. 2007 | WUSTL v5.0.1 | Available |
| Rabbit | oryCun2 | Apr. 2009 | Broad Institute release OryCun2 | Available |
| Rat | rn5 | Oct. 2011 | RGSC Rnor_5.0 | Available |
| rn4 | Nov. 2004 | Baylor College of Medicine HGSC v3.4 | Available | |
| rn3 | Jun. 2003 | Baylor College of Medicine HGSC v3.1 | Available | |
| rn2 | Jan. 2003 | Baylor College of Medicine HGSC v2.1 | Archived | |
| rn1 | Nov. 2002 | Baylor College of Medicine HGSC v1.0 | Archived | |
| Rhesus | rheMac3 | Oct. 2010 | Beijing Genomics Institute CR_1.0 | Available |
| rheMac2 | Jan. 2006 | Baylor College of Medicine HGSC v1.0 Mmul_051212 | Available | |
| rheMac1 | Jan. 2005 | Baylor College of Medicine HGSC Mmul_0.1 | Archived | |
| Rock hyrax | proCap1 | Jul. 2008 | Baylor College of Medicine HGSC Procap1.0 | Available |
| Sheep | oviAri1 | Feb. 2010 | ISGC Ovis aries 1.0 | Available |
| Shrew | sorAra1 | Jun. 2006 | Broad Institute SorAra1.0 | Available |
| Sloth | choHof1 | Jul. 2008 | Broad Institute ChoHof1.0 | Available |
| Squirrel | speTri2 | Nov. 2011 | Broad Institute SpeTri2.0 | Available |
| Squirrel monkey | saiBol1 | Oct. 2011 | Broad Institute SaiBol1.0 | Available |
| Tarsier | sorAra1 | Aug. 2008 | WUSTL/Broad Institute Tarsyr1.0 | Available |
| Tasmanian devil | sarHar1 | Feb. 2011 | Wellcome Trust Sanger Institute Devil_refv7.0 | Available |
| Tenrec | echTel1 | Jul. 2005 | Broad Institute EchTel1 | Available |
| Tree shrew | tupBel1 | Dec. 2006 | Broad Institute Tupbel1.0 | Available |
| Wallaby | macEug2 | Sep. 2009 | Tammar Wallaby Genome Sequencing Consortium Meug_1.1 | Available |
| White rhinoceros | cerSim1 | May 2012 | Broad Institute CerSimSim1.0 | Available |
| VERTEBRATES | ||||
| Atlantic cod | gadMor1 | May 2010 | Genofisk GadMor_May2010 | Available |
| Budgerigar | melUnd1 | Sep. 2011 | WUSTL v6.3 | Available |
| Chicken | galGal4 | Nov. 2011 |
ICGC Gallus-gallus-4.0 | Available |
| galGal3 | May 2006 | WUSTL Gallus-gallus-2.1 | Available | |
| galGal2 | Feb. 2004 | WUSTL Gallus-gallus-1.0 | Available | |
| Coelacanth | latCha1 | Aug. 2011 | Broad Institute LatCha1 | Available |
| Fugu | fr3 | Oct. 2011 | JGI v5.0 | Available |
| fr2 | Oct. 2004 | JGI v4.0 | Available | |
| fr1 | Aug. 2002 | JGI v3.0 | Available | |
| Lamprey | petMar2 | Sep. 2010 | WUGSC 7.0 | Available |
| petMar1 | Mar. 2007 | WUSTL v3.0 | Available | |
| Lizard | anoCar2 | May 2010 | Broad Institute AnoCar2 | Available |
| anoCar1 | Feb. 2007 | Broad Institute AnoCar1 | Available | |
| Medaka | oryLat2 | Oct. 2005 | NIG v1.0 | Available |
| Medium ground finch | geoFor1 | Apr. 2012 | BGI GeoFor_1.0 / NCBI 13302 | Available |
| Nile tilapia | oreNil2 | Jan. 2011 | Broad Institute Release OreNil1.1 | Available |
| Painted turtle | chrPic1 | Dec. 2011 | IPTGSC Chrysemys_picta_bellii-3.0.1 | Available |
| Stickleback | gasAcu1 | Feb. 2006 | Broad Institute Release 1.0 | Available |
| Tetraodon | tetNig2 | Mar. 2007 | Genoscope v7 | Available |
| tetNig1 | Feb. 2004 | Genoscope v7 | Available | |
| Turkey | melGal1 | Dec. 2009 | Turkey Genome Consortium v2.01 | Available |
| X. tropicalis | xenTro3 | Nov. 2009 | JGI v.4.2 | Available |
| xenTro2 | Aug. 2005 | JGI v.4.1 | Available | |
| xenTro1 | Oct. 2004 | JGI v.3.0 | Available | |
| Zebra finch | taeGut1 | Jul. 2008 | WUSTL v3.2.4 | Available |
| Zebrafish | danRer7 | Jul. 2010 | Sanger Institute Zv9 | Available |
| danRer6 | Dec. 2008 | Sanger Institute Zv8 | Available | |
| danRer5 | Jul. 2007 | Sanger Institute Zv7 | Available | |
| danRer4 | Mar. 2006 | Sanger Institute Zv6 | Available | |
| danRer3 | May 2005 | Sanger Institute Zv5 | Available | |
| danRer2 | Jun. 2004 | Sanger Institute Zv4 | Archived | |
| danRer1 | Nov. 2003 | Sanger Institute Zv3 | Archived | |
| DEUTEROSTOMES | ||||
| C. intestinalis | ci2 | Mar. 2005 | JGI v2.0 | Available |
| ci1 | Dec. 2002 | JGI v1.0 | Available | |
| Lancelet | braFlo1 | Mar. 2006 | JGI v1.0 | Available |
| S. purpuratus | strPur2 | Sep. 2006 | Baylor College of Medicine HGSC v. Spur 2.1 | Available |
| strPur1 | Apr. 2005 | Baylor College of Medicine HGSC v. Spur_0.5 | Available | |
| INSECTS | ||||
| A. mellifera | apiMel2 | Jan. 2005 | Baylor College of Medicine HGSC v.Amel_2.0 | Available |
| apiMel1 | Jul. 2004 | Baylor College of Medicine HGSC v.Amel_1.2 | Available | |
| A. gambiae | anoGam1 | Feb. 2003 | IAGP v.MOZ2 | Available |
| D. ananassae | droAna2 | Aug. 2005 | Agencourt Arachne release | Available |
| droAna1 | Jul. 2004 | TIGR Celera release | Available | |
| D. erecta | droEre1 | Aug. 2005 | Agencourt Arachne release | Available |
| D. grimshawi | droGri1 | Aug. 2005 | Agencourt Arachne release | Available |
| D. melanogaster | dm3 | Apr. 2006 | BDGP Release 5 | Available |
| D. melanogaster | dm2 | Apr. 2004 | BDGP Release 4 | Available |
| dm1 | Jan. 2003 | BDGP Release 3 | Available | |
| D. mojavensis | droMoj2 | Aug. 2005 | Agencourt Arachne release | Available |
| droMoj1 | Aug. 2004 | Agencourt Arachne release | Available | |
| D. persimilis | droPer1 | Oct. 2005 | Broad Institute release | Available |
| D. pseudoobscura | dp3 | Nov. 2004 | Flybase Release 1.0 | Available |
| dp2 | Aug. 2003 | Baylor College of Medicine HGSC Freeze 1 | Available | |
| D. sechellia | droSec1 | Oct. 2005 | Broad Institute Release 1.0 | Available |
| D. simulans | droSim1 | Apr. 2005 | WUSTL Release 1.0 | Available |
| D. virilis | droVir2 | Aug. 2005 | Agencourt Arachne release | Available |
| droVir1 | Jul. 2004 | Agencourt Arachne release | Available | |
| D. yakuba | droYak2 | Nov. 2005 | WUSTL Release 2.0 | Available |
| droYak1 | Apr. 2004 | WUSTL Release 1.0 | Available | |
| NEMATODES | ||||
| C. brenneri | caePb2 | Feb. 2008 | WUSTL 6.0.1 | Available |
| caePb1 | Jan. 2007 | WUSTL 4.0 | Available | |
| C. briggsae | cb3 | Jan. 2007 | WUSTL Cb3 | Available |
| cb1 | Jul. 2002 | Wormbase v. cb25.agp8 | Available | |
| C. elegans | ce10 | Oct. 2010 | Wormbase v. WS220 | Available |
| ce6 | May 2008 | Wormbase v. WS190 | Available | |
| ce4 | Jan. 2007 | Wormbase v. WS170 | Available | |
| ce2 | Mar. 2004 | Wormbase v. WS120 | Available | |
| ce1 | May 2003 | Wormbase v. WS100 | Archived | |
| C. japonica | caeJap1 | Mar. 2008 | WUSTL 3.0.2 | Available |
| C. remanei | caeRem3 | May 2007 | WUSTL 15.0.1 | Available |
| caeRem2 | Mar. 2006 | WUSTL 1.0 | Available | |
| P. pacificus | priPac1 | Feb. 2007 | WUSTL 5.0 | Available |
| OTHER | ||||
| Sea Hare | aplCal1 | Sep. 2008 | Broad Release Aplcal2.0 | Available |
| Yeast | sacCer3 | April 2011 | SGD April 2011 sequence | Available |
| sacCer2 | June 2008 | SGD June 2008 sequence | Available | |
| sacCer1 | Oct. 2003 | SGD 1 Oct 2003 sequence | Available |
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